SNP Profiles matching NA 286

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTAATTCCCCAAAACCGGTT
1._NA_286
CCAAGGTTTTAATTCCCCAAAACCGGTT
2._GC-01-101-5-18
CCAAGGTTTTAATTCCCCAAAACCGGTT
3._GC-01-101-5-18
CCAAGGTTTTAATTCCCCAAAACCGGTT
4._RUQ_801
_AAGGTT_______CCGG_
5._RUQ_1587
_AAGGTT_______CCGG_
6._NA_286
CCAAGGTTTTACTTCCCCAAAACCGGTT
7._RUQ_468
_AAGGTT_______CCGG_
8._RUQ_897
_AACGTT_______CCGG_
9._POUND_5_/C
CCAAGGTTTT_TTCCCCAAGGCCGGTT
10._POUND_5_/C
CCAAGGTTTT_TTCCCCAAGGCCGGTT
11._POUND_5_/C
CCAAGGTTTT_TTCCCCAAGGCCGGTT
12._POUND_5_/C
CCAAGGTTTT_TTCCCCAAGGCCGGTT
13._GC-08-165-4-08
CCAAGGTTTT_TTCCCCAAGGCCGGTT
14._GC-08-165-4-08
CCAAGGTTTT_TTCCCCAAGGCCGGTT
15._GC-08-165-4-08
CCAAGGTTTT_TTCCCCAAGGCCGGTT
16._GC-08-165-4-08
CCAAGGTTTT_TTCCCCAAGGCCGGTT
17._MARPER_38
CCAACGTT-AATTCC-AAAG-GGTT
18._POUND_2_/A
CCAACCTTTTAATTCCCCAAAGCCGGTT
19._POUND_2_/A
CCAACCTTTTAATTCCCCAAAGCCGGTT
20._POUND_2_/A
CCAACCTTTTAATTCCCCAAAGCCGGTT
21._POUND_2_/A
CCAACCTTTTAATTCCCCAAAGCCGGTT
22._POUND_2_/A
CCAACCTTTTAATTCCCCAAAGCCGGTT
23._POUND_2_/A
CCAACCTTTTAATTCCCCAAAGCCGGTT
24._GC-01-093-5-10
CCAACCTTTTAATTCCCCAAAGCCGGTT
25._GC-01-093-5-10
CCAACCTTTTAATTCCCCAAAGCCGGTT
26._GC-01-093-5-10
CCAACCTTTTAATTCCCCAAAGCCGGTT
27._GC-01-093-5-10
CCAACCTTTTAATTCCCCAAAGCCGGTT
28._GC-01-093-5-10
CCAACCTTTTAATTCCCCAAAGCCGGTT
29._GC-01-093-5-10
CCAACCTTTTAATTCCCCAAAGCCGGTT
30._POUND_2_/A
CCAACCTTTTAATTCC_AAAGCCGGTT
31._POUND_25_/A
CCAACCTTTTAATTCC_AAAGCCGGTT
32._RUQ_877
_AACCTT_______CCGG_
33._POUND_5_/C
CCAAGGTTTTCCTTCC_AAGGCCGGTT
34._RUQ_1588
_AACGTT_______CCAG_
35._MARPER_28
CCAACCTT-AATTCC-AAAG-GGTT
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAACCAAGGGGCCCCAA
1._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
2._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
3._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
4._RUQ_801
___CCGGGG_CCAAGGGGCCCCAA
5._RUQ_1587
___CCGGGG_CCAAGGGGCCCCAA
6._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
7._RUQ_468
___CCGGGG_CCAAGGGGCTCCAA
8._RUQ_897
___CCGGGG_CCAAGGGGCTCCAA
9._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
10._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
11._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
12._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
13._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
14._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
15._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
16._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
17._MARPER_38
AAGG-CC-GGAACC-GG-CTCCAA
18._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
19._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
20._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
21._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
22._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
23._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
24._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
25._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
26._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
27._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
28._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
29._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
30._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
31._POUND_25_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
32._RUQ_877
___CCCGGG_CCAAGGGG-CCAA
33._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
34._RUQ_1588
___CCGGGG_CCAAGGGGTTCCAA
35._MARPER_28
AAGG-CC-GGAACC-GG-TTCCAA
 2930313233343536373839   
_Input profile
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
1._NA_286
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
2._GC-01-101-5-18
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
3._GC-01-101-5-18
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
4._RUQ_801
_AACCAACCAACCGGCC__X_XX_XX_X
5._RUQ_1587
_AACCAACCAACCGGCC__X_XX_XX_X
6._NA_286
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
7._RUQ_468
_AACCAACCAACCGGCC__X_XX_XX_X
8._RUQ_897
_AACCAACCAACCGGCC__X_XX_XX_X
9._POUND_5_/C
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
10._POUND_5_/C
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
11._POUND_5_/C
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
12._POUND_5_/C
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
13._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
14._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
15._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
16._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
17._MARPER_38
GG-CCAA---GG-TT-X_XX_XX_X
18._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
19._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
20._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
21._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
22._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
23._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
24._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
25._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
26._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
27._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
28._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
29._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
30._POUND_2_/A
GGAACCAA_AACCGGCCTTGGX_XX_XX_X
31._POUND_25_/A
GGAACCAA_AACCGGCCTTGGX_XX_XX_X
32._RUQ_877
_AACCAACCAACCGGCC__X_XX_XX_X
33._POUND_5_/C
GGAACCAG_AACCGGCCTTGGX_XX_XX_X
34._RUQ_1588
_AACCAACCAACCGGCC__X_XX_XX_X
35._MARPER_28
GG-CCAA---GG-TT-X_XX_XX_X

Input profile: NA_286

 
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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._NA_286

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

2._NA_286 GC-01-101-5-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._NA_286 GC-01-101-5-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

4._NA_149 RUQ_801

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._NA_702 RUQ_1587

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._NA_286

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

7._NA_756 RUQ_468

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._CRU_70 RUQ_897

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._POUND_5_/C

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._POUND_5_/C

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

11._POUND_5_/C

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

12._POUND_5_/C

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

13._POUND_5_/C GC-08-165-4-08

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._POUND_5_/C GC-08-165-4-08

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._POUND_5_/C GC-08-165-4-08

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._POUND_5_/C GC-08-165-4-08

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._MARPER_38

94.2 %
26 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

18._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

20._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

21._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

22._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

23._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

24._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

25._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

27._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

28._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

29._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._POUND_2_/A

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

31._POUND_25_/A

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

32._CRU_100 RUQ_877

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._POUND_5_/C

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

34._NA_710 RUQ_1588

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

35._MARPER_28

90.4 %
26 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25